Module cnvpytor
CNVpytor
CNVpytor is a Python package and command line tool for CNV analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.
Source and tutorial:: https://github.com/abyzovlab/CNVpytor
Bug reports:: https://github.com/abyzovlab/CNVpytor/issues
API Documentation:: https://abyzovlab.github.io/CNVpytor/
Bugs
Please report any bugs that you find on GitHub: https://github.com/abyzovlab/CNVpytor/issues
Or, even better, fork the repository on GitHub and create a pull request.
License
Released under MIT licence.
Source code
"""
CNVpytor
========
CNVpytor is a Python package and command line tool for CNV analysis
from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.
Source and tutorial::
https://github.com/abyzovlab/CNVpytor
Bug reports::
https://github.com/abyzovlab/CNVpytor/issues
API Documentation::
https://abyzovlab.github.io/CNVpytor/
## Bugs
Please report any bugs that you find on GitHub:
https://github.com/abyzovlab/CNVpytor/issues
Or, even better, fork the repository on GitHub and create a pull request.
## License
Released under MIT licence.
"""
from __future__ import absolute_import, print_function, division
from .io import *
from .bam import *
from .utils import *
from .fasta import *
from .vcf import *
from .root import *
from .viewer import *
from .genome import Genome
from .version import __version__
Sub-modules
cnvpytor.annotator
-
cnvpytor.annotator …
cnvpytor.bam
-
class Bam: BAM/CRAM/SAM reading class
cnvpytor.export
cnvpytor.fasta
-
cnvpytor.fasta …
cnvpytor.genome
-
cnvpytor.genome …
cnvpytor.io
-
cnvpytor.io …
cnvpytor.pool
-
cnvpytor.pool …
cnvpytor.root
-
cnvpytor.root …
cnvpytor.utils
-
cnvpytor.utils …
cnvpytor.vcf
-
cnvpytor.vcf …
cnvpytor.version
cnvpytor.viewer
-
cnvpytor.viewer …
cnvpytor.viewparams
-
cnvpytor.viewparams …