Module cnvpytor

CNVpytor

CNVpytor is a Python package and command line tool for CNV analysis from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.

Source and tutorial:: https://github.com/abyzovlab/CNVpytor

Bug reports:: https://github.com/abyzovlab/CNVpytor/issues

API Documentation:: https://abyzovlab.github.io/CNVpytor/

Bugs

Please report any bugs that you find on GitHub: https://github.com/abyzovlab/CNVpytor/issues

Or, even better, fork the repository on GitHub and create a pull request.

License

Released under MIT licence.

Source code
"""
CNVpytor
========
CNVpytor is a Python package and command line tool for CNV analysis
from depth-of-coverage by mapped reads developed in Abyzov Lab, Mayo Clinic.

Source and tutorial::
    https://github.com/abyzovlab/CNVpytor

Bug reports::
    https://github.com/abyzovlab/CNVpytor/issues

API Documentation::
    https://abyzovlab.github.io/CNVpytor/

## Bugs

Please report any bugs that you find on GitHub:
https://github.com/abyzovlab/CNVpytor/issues

Or, even better, fork the repository on GitHub and create a pull request.

## License

Released under MIT licence.

"""
from __future__ import absolute_import, print_function, division
from .io import *
from .bam import *
from .utils import *
from .fasta import *
from .vcf import *
from .root import *
from .viewer import *
from .genome import Genome
from .version import __version__

Sub-modules

cnvpytor.annotator

cnvpytor.annotator …

cnvpytor.bam

class Bam: BAM/CRAM/SAM reading class

cnvpytor.export
cnvpytor.fasta

cnvpytor.fasta …

cnvpytor.genome

cnvpytor.genome …

cnvpytor.io

cnvpytor.io …

cnvpytor.pool

cnvpytor.pool …

cnvpytor.root

cnvpytor.root …

cnvpytor.utils

cnvpytor.utils …

cnvpytor.vcf

cnvpytor.vcf …

cnvpytor.version
cnvpytor.viewer

cnvpytor.viewer …

cnvpytor.viewparams

cnvpytor.viewparams …